Contents

Pymol or Chimera commands

SimRNA RNA modeling

  • Model a bKL (bKL_b) using restraints (link).
  • Model the HIV-1 DIS 180 degree KL using restraints (link).
  • Model palindromic 6-bp TAR KL (link).

Nanotiler structure design

  • Helix scan for 2 lengths (link).
  • Final opt and output (link).
  • Helix scan for 3 lengths (link).
  • Final opt and output (link).
  • Create perfect symmetry (link_web and link_file for Pli_iib_6bp_dimer)

Scripts collection of this site

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